rs250898097 SNP Detail

Summary

• ID
  rs250898097
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72812798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATGTTAAGA TGACCAAAAG CAAAATGGTC
  TCTTGCAAGA ATACTTATTT CTTAACTAGT GCAAATACAC TAAAGTATAT GCAAAGCATA
  AAGCCGGTAT TTAGATAAAT ACATGTAGTA ACATACAGTA TAATTTACGG TGGATTAATA
  K
  GTTTTTGTAC AGTCATTAAA TGAGAATCAA GTATTATCAT GAACAAATCT CGAAACAACA
  GTAAGATCTG TTTTCCCCTG TCCCCACGAC TTGGCCCAGT TTCTTGTTTT CTCTCAAGAT
  TTTCACAAGC TATTCCTGGC CAAGAAACAA                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320344170	CHEV_2_72820511	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250898097					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72812798 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11763	CpG island 11763	1358 bp distal
D130067C23Rik	RIKEN cDNA D130067C23 gene	854 bp downstream
Rr373352	regulatory region 373352	1125 bp downstream
Rr559064	regulatory region 559064	1518 bp distal
Rr559065	regulatory region 559065	863 bp proximal
Sp3os	trans-acting transcription factor 3, opposite strand	within coordinates
Tssr24526	transcription start site region 24526	1983 bp upstream
Tssr24527	transcription start site region 24527	1542 bp upstream
Tssr24528	transcription start site region 24528	1514 bp upstream