rs250904378 SNP Detail

Summary

• ID
  rs250904378
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127124427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCTCCCGCC GCACACTGAC
  GGCTTCCAAA CTTTCCCTCT CATAACAAGG CGCCCTGTCA CCCAGACTGC TTCCTTCAGC
  TCGGGGAGGA GGGGAAGGCA GGCGCACGAA GTAGGAAGGA ACTTGGGGAG AGGGCGGGTG
  GAGGGTGGGC GAAGCACTGA AGGGAGCGAG GTCAGGAAGG CAGAAGTCAG GCACTTTGGG
  R
  GGAGAAATGG CGGGGGCAGG TGAGGGTGCG GGGCTGTGGA TGGGGCCAGG GAAAGGGGCC
  GAAAGGACGC GGAGGGGGCA GAGGGTAGGG ACAGAAGGGG AGGAGAGAGA AGGGAGGGGG
  AGGGGCGGGG GGGCCGGGCC CCGCACTCAC CGCGGCCCAT GGTTCGGCTG GCCCCGCCCT
  GCGCAGTCGC GGCCCAGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382182445	MGP_WTSI_10_126725614	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250904378					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382182445	MGP_WTSI_10_126725614	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127124427 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2349	CpG island 2349	within coordinates
Cpgi2350	CpG island 2350	1767 bp proximal
Gm4189	predicted gene 4189	1135 bp downstream
Gm20492	predicted gene 20492	within coordinates
Gm66222	predicted gene, 66222	1451 bp upstream
Mbd6	methyl-CpG binding domain protein 6	within coordinates
Rr369092	regulatory region 369092	1910 bp upstream
Rr402323	regulatory region 402323	529 bp upstream
Rr440862	regulatory region 440862	1977 bp distal
Rr440863	regulatory region 440863	63 bp distal
Rr440864	regulatory region 440864	within coordinates
Rr440865	regulatory region 440865	322 bp proximal
Rr440866	regulatory region 440866	961 bp proximal
Rr440867	regulatory region 440867	1726 bp proximal
Tssr3392	transcription start site region 3392	352 bp upstream
Tssr96176	transcription start site region 96176	473 bp downstream
Tssr96177	transcription start site region 96177	37 bp downstream
Tssr96178	transcription start site region 96178	7 bp downstream
Tssr96179	transcription start site region 96179	1445 bp upstream
Tssr99755	transcription start site region 99755	128 bp upstream
Tssr99756	transcription start site region 99756	98 bp upstream
Tssr99757	transcription start site region 99757	52 bp downstream
Tssr99758	transcription start site region 99758	201 bp downstream
Tssr99759	transcription start site region 99759	261 bp downstream
Tssr99760	transcription start site region 99760	293 bp downstream
Tssr99761	transcription start site region 99761	407 bp downstream
Tssr99762	transcription start site region 99762	441 bp downstream
Tssr99763	transcription start site region 99763	498 bp downstream
Tssr99764	transcription start site region 99764	1780 bp downstream