rs250929703 SNP Detail

Summary

• ID
  rs250929703
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9675905 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGTCTAG AGAAAGCAAC
  ACACCAAGTG GTCAAGATTG TTATTTCAGC TTTTTATATA TGTAAGCTAG CAGAAGGCCA
  GTTTGCCATG TTATGAATGA CTGCTGCTTT CGGAGGGAGT AAACCAGACA TTCTGCATCC
  AGATCATGCC CCTAAATTCT ATAGGTTTTG GCTAGGGCTA GGAGGGCCTT ATTCATCAAC
  W
  ATTGAGTAAA AGGGTGTCCA CATGGCCCAT TGTTCTTGGA GATTGAACAT CACGTGGCTT
  GCTAGACATG TGATGGGGCT CATTAAATGT TTATTTGGGG TACCTTCCAA CCGCTAAAGA
  GGGATGAGGA CAAGGATTCT AAAATGAACT TTGTCCTCCC AGAAACTGAT CACCCGTCCA
  GAAAATGCCT GTTTTAAGTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320651689	CHEV_3_9610845	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250929703					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9675905 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12974	CpG island 12974	329 bp distal
Gm56803	predicted gene, 56803	1862 bp downstream
Rr69501	regulatory region 69501	105 bp distal
Rr73453	regulatory region 73453	696 bp proximal
Rr78141	regulatory region 78141	304 bp distal
Tssr32578	transcription start site region 32578	805 bp upstream
Tssr32579	transcription start site region 32579	759 bp upstream
Tssr32580	transcription start site region 32580	721 bp upstream
Tssr32581	transcription start site region 32581	598 bp upstream
Zfp704	zinc finger protein 704	760 bp upstream