rs250939069 SNP Detail

Summary

• ID
  rs250939069
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:45858390 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGATGGA GAGACAGTAG
  ACCAGCACCG GGGTGGCAGA CAGGAATGTA TCGGGAAGAG ACAGAGATGG GAACCAGCAA
  CCCGAGATAA ACACAGAAGG GTCCCACACA GAACCACGAG AAAAGGGTGA CCAGAATGCC
  AACATGGGAA AGTACAGAGA GAGACACCAC AAGAGGCGGA GAGAGATCAG AAGTGGAGGC
  S
  CAGATGGATA GAATGGTATC CAGAAAGAGT TCCAAAGGCA GACACAAAGA TGGCGATGAA
  ACAAGAGAAA GGGTGGATGG GAAAAAAAAG GAATAGACAA ACAGGCATTA GCAAAGGTAA
  GTCCTCAGCC CAGACCCTTT CCAGAGGTCC CAGGAGAGTA AGGAGGGACC CACTGACATC
  ATCTCCCCTC TTAACAGGTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325403377	CHEV_17_45684413	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250939069					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:45858390 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9190	CpG island 9190	1283 bp distal
Cpgi9191	CpG island 9191	358 bp distal
Cpgi9192	CpG island 9192	1091 bp proximal
Rr527421	regulatory region 527421	229 bp proximal
Rr527422	regulatory region 527422	581 bp proximal
Rr527423	regulatory region 527423	1365 bp proximal
Tmem151b	transmembrane protein 151B	within coordinates
Tssr5128	transcription start site region 5128	1705 bp downstream