rs250947408 SNP Detail

Summary

• ID
  rs250947408
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:77355257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGCGTGACC TGTGCGCCCG ATCTCTAGGC
  CACAGAGCAC TGTGTTCCTA GCAGAAACCA AGATGGGTGT TAGTGATGGA GATGGTTGGG
  ATACAGCAGA CCAAGGTCCA GTCAGACTCT AACCTTATCT TTACCTAGTG TCagagaaag
  R
  cagagtcaga gagatggaga gagacacaca gacacacaca gaaacagaga gagacagaga
  tacagagaga gagagagaga gagagagaga gagagagaga gagagagaga gagagagagG
  TGTTCAGACT CTGATCCTGG GAGTGGGATG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323755237	CHEV_11_77277933	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250947408					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:77355257 () rs orientation: forward

Symbol	Name	Function Class
Coro6	coronin 6	within coordinates
Cpgi3305	CpG island 3305	1210 bp distal
Rr247229	regulatory region 247229	456 bp distal
Tssr103137	transcription start site region 103137	1993 bp downstream
Tssr103138	transcription start site region 103138	1866 bp downstream
Tssr103139	transcription start site region 103139	1835 bp downstream
Tssr103140	transcription start site region 103140	1779 bp downstream