rs250948029 SNP Detail

Summary

• ID
  rs250948029
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:60177852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCCTGGCT AGGTCATGTG
  ATCTGTGAGT ATTTATCTAT CTTGTTCTCA ATAATAGCAA TTAATAATAA ACCGCCTGGC
  TGTGCCCCGG AACAAAGGAT TGGATGTCTA GCGAAACGTG TCCACAGCAG TTCCATTTTG
  TAAGGCTGCT ATCAGATCAA GCAAGATAAA ATGTGCTCAG TACTTGAAGG AGCAACAATC
  Y
  CTTCAATATT ATTATTTCTT TCTCTTTGTC GCTCCCTGTT TCCCTCTGAG TGCCGTAAGC
  ATGTGTGCTG TAAGCATGTT TGTGCAGGTC GGCACACCAT GTGCTCATAG AAGGGTACAG
  GCTGATGTTG GGATGTCTTC CTCTATCATT GCCTACCTCT AAAAACAGTA CATTTGCTTT
  TGTCAATTGA TTGATTGATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324360213	CHEV_13_60131399	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250948029					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:60177852 () rs orientation: forward

Symbol	Name	Function Class
A530065N20Rik	RIKEN cDNA A530046M15 gene	within coordinates
Rr284562	regulatory region 284562	within coordinates
Tssr120109	transcription start site region 120109	409 bp downstream
Tssr120110	transcription start site region 120110	345 bp downstream
Tssr120111	transcription start site region 120111	329 bp downstream