rs250953081 SNP Detail

Summary

• ID
  rs250953081
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:74720537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGTGCCCA TAATATTCTA
  GTGCTTTTCA ATGCTAACTG TACGAATGGA GATTGTATGG CTTTCCACCA AAGAGAGTTC
  CAGATGTAGG ATATTTTTGT TGTCCTAATC AAGAAGATGT AAGTGCTCAG CCCCCTTCCT
  GAACTGCAGT TTGATAGTTC TTCACTTTTG CGAGGACCCG AGGTGGTAAG AGGCAGCTGG
  Y
  GGTTGAGAGA GGTCTGACTA GACTACGAGT TGCTCAATGA ACAAGGAGCA GTTGGAGTAG
  TCCCTTCACT TGGGCCTCAG TTTTCTTACC TGCAAAGTGC AATGATTTGG GCAAGCTGAC
  TTCAAAGATC TTTCTGACTG TACCTAGGGA CAGTCCTAAG CCCTGCAGCC AAGATAAAGA
  CTGACTGGCG AGCTTAGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383888984	MGP_WTSI_11_74643213	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250953081					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383888984	MGP_WTSI_11_74643213	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:74720537 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3246	CpG island 3246	within coordinates
Gm74357	predicted gene, 74357	234 bp downstream
Mnt	max binding protein	1209 bp upstream
Rr402716	regulatory region 402716	953 bp downstream
Rr402717	regulatory region 402717	520 bp upstream
Rr450974	regulatory region 450974	1425 bp distal
Rr450975	regulatory region 450975	931 bp distal
Rr450976	regulatory region 450976	373 bp proximal
Rr450977	regulatory region 450977	1088 bp proximal
Rr450978	regulatory region 450978	1265 bp proximal
Rr450979	regulatory region 450979	1506 bp proximal
Tssr102911	transcription start site region 102911	1177 bp upstream
Tssr102912	transcription start site region 102912	1196 bp upstream
Tssr102913	transcription start site region 102913	1224 bp upstream
Tssr102914	transcription start site region 102914	1503 bp upstream
Tssr109144	transcription start site region 109144	180 bp downstream
Tssr109145	transcription start site region 109145	948 bp downstream