rs250957712 SNP Detail

Summary

• ID
  rs250957712
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:117496252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTAG AGTTTCATTC TTGGATAAAT
  Y
  TGCATCACAG ACATTTGGAA ACCAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324202000	CHEV_12_118771105	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250957712					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:117496252 () rs orientation: forward

Symbol	Name	Function Class
2900082C11Rik	RIKEN cDNA 2900082C11 gene	339 bp downstream
Cpgi5227	CpG island 5227	923 bp proximal
Rapgef5	Rap guanine nucleotide exchange factor (GEF) 5	Intron
Rr474129	regulatory region 474129	548 bp proximal
Rr474130	regulatory region 474130	1297 bp proximal
Tssr115537	transcription start site region 115537	1225 bp upstream
Tssr115538	transcription start site region 115538	1288 bp upstream
Tssr115539	transcription start site region 115539	1314 bp upstream