rs250963688 SNP Detail

Summary

• ID
  rs250963688
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:76301134 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACTCATTT CTGCACCAGG
  GCAAATGGGG AGGGATGCCA GCCTTGCTGG CATCTAGCTG ATGAACAAAG TAGTCTCTGC
  TTCAATACTG ATTTGGTCCG CTGAGACCAG AGGATCACTC GTCCTGAACT CTGCTCCCTT
  CACGCTGATG AAGCCCCACG CTTCTGCTCT GAGGTCCCTC TTAGCTGCTG GGCTGAGCCT
  R
  CTTTTGGGCT TCAACCCTGG GAGGATAGCA GGTTTTAGTT ATGGAAGGCT GGGTTCAGTA
  GTAGCGAACT TGTCTCTATG TCAAGGCTGT GGATTGATCG TCCCTGCTGT TACTAGAATT
  GCGAGCCAGA CCCTGGGCTC TGAGAATCTA ATAAACCAGG TTAGTCACCA TCCTTAATAA
  GTCGATTAAA CAAGTAATGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss386546288	MGP_WTSI_12_77355347	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250963688					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss386546288	MGP_WTSI_12_77355347	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:76301134 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4777	CpG island 4777	527 bp proximal
Gm47525	predicted gene, 47525	within coordinates
Mthfd1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	938 bp upstream
Rr403350	regulatory region 403350	685 bp upstream
Rr468112	regulatory region 468112	448 bp proximal
Rr468113	regulatory region 468113	1367 bp proximal
Tssr113934	transcription start site region 113934	849 bp upstream
Tssr113935	transcription start site region 113935	884 bp upstream
Tssr113936	transcription start site region 113936	930 bp upstream
Tssr113937	transcription start site region 113937	972 bp upstream
Tssr113938	transcription start site region 113938	988 bp upstream
Tssr113939	transcription start site region 113939	1011 bp upstream
Tssr113940	transcription start site region 113940	1093 bp upstream
Tssr113941	transcription start site region 113941	1123 bp upstream
Tssr116711	transcription start site region 116711	686 bp downstream
Tssr116712	transcription start site region 116712	712 bp downstream