rs250968606 SNP Detail

Summary

• ID
  rs250968606
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101900860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAGGTTTG TGAGTCCCAA
  AAATAACAGG GTCCTTAAGT GAGGTTTGTA AATCCCCAAA ATAACAGGAT CAGATTCAAG
  TGACTTCAAT GAAGCTATTA AAAATACGTT CCAAGCCAGG TGTGGTAGCA CGTTTGTAAT
  CTCAGCATTC CAGAGGTGGA GGCAGGAGGT TCAGAAGTTC GAGGCCAGCC TGGACTATAT
  R
  AGACCTTACC TACCTTAATA AATAAAAAGT TCCCGAGTTC AAGGCCAGCC TGGTCTACAT
  TCCAGGACAG CCAAGGCTAC ACAAAGAAAC CTGGTCTAAA AAAAACAAAA CAAACAAACA
  AACAAAAAAA CAAAAAACAA GCAAACAAAC AAACAAAAGC CCAAACAAAA AAAAGAAAAA
  CCTGAAAAAA AATTGAAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322353674	CHEV_7_109400167	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250968606					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101900860 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19524	CpG island 19524	669 bp distal
Rhog	ras homolog family member G	1535 bp upstream
Rr652562	regulatory region 652562	1576 bp distal
Rr652563	regulatory region 652563	1040 bp distal
Rr652564	regulatory region 652564	711 bp distal
Tssr2354	transcription start site region 2354	1377 bp downstream
Tssr68328	transcription start site region 68328	1960 bp downstream
Tssr68329	transcription start site region 68329	1939 bp downstream
Tssr68330	transcription start site region 68330	1398 bp downstream
Tssr73943	transcription start site region 73943	1567 bp upstream
Tssr73944	transcription start site region 73944	1530 bp upstream
Tssr73945	transcription start site region 73945	1515 bp upstream
Tssr73946	transcription start site region 73946	1319 bp upstream
Tssr73947	transcription start site region 73947	1174 bp upstream
Tssr73948	transcription start site region 73948	1138 bp upstream
Tssr73949	transcription start site region 73949	1105 bp upstream
Tssr73950	transcription start site region 73950	1058 bp upstream