rs250992296 SNP Detail

Summary

• ID
  rs250992296
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131646831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTGTTCTT ATAAAGATAG
  GGAAACTGAG CCCTGGTGAG CTTAGGTGTG CTCTCCTCTC CCACCCATCT CCTTCCTTCC
  TCCTCCCGGG CCCAGGGTGG AGGAGAGGAG GGGGGTGAAG GAAGTCATAG GCCTCACGTA
  TATATGTCTC TCTAGCATGG AGGGCCAGCT AGGGCACACA TTCCCTTGAG CACAAGGCTC
  Y
  AGAAAGGAGC AAGTCAGAAC CAGCCTTGGG CCTCAGACCT CAATGCCGGC CAGCAACCCC
  CCCCCCCCCC AAACAGGTCA ATCCCCAAGA GCATTGTCAG CTCAGCTGTG TGCAGAGGGG
  GCACGGGAGG GAAGACCTGG CCCAGGGCTC TGGAGGAGCA CGAGGTGCAA AGGGGAATCC
  GTGTTCCTGA GAGAAAAGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321329094	CHEV_4_131475435	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250992296					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131646831 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14947	CpG island 14947	191 bp proximal
Gm12992	predicted gene 12992	within coordinates
Gm50475	predicted gene, 50475	1296 bp downstream
Rr85751	regulatory region 85751	1631 bp distal
Rr100128	regulatory region 100128	within coordinates
Tmem200b	transmembrane protein 200B	1680 bp upstream
Tssr39357	transcription start site region 39357	1048 bp upstream
Tssr39358	transcription start site region 39358	1630 bp upstream
Tssr39359	transcription start site region 39359	1678 bp upstream
Tssr43616	transcription start site region 43616	1182 bp downstream
Tssr43617	transcription start site region 43617	1499 bp downstream