rs250995151 SNP Detail

Summary

• ID
  rs250995151
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:121420999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCAATTGC TTGAAAAGAT
  TAATCCTGAT TTACAAAAAA ATATTTTTTG ACCCAGGGTC TCTTCACAAG CCCAAGTTGG
  ACTCGAACCT GCAATTTTCC TGCCTTTGCC TCTCACATGC TGGGAGACAA ATGAAAGAAC
  TTAGGGAAGC GCAGAAAACC ATCACCACTA CAGGATCGTC CCAGAAGGCA GAATCTCGCC
  Y
  ACAGAGAAAC TGTAACTGAA AAGTACAGAA GTTACTATTC TTGAAAAGCC AGTAACTCTT
  TTGATTCTGT TTAAGGATGG TTTTCCTGAG CCAGTGAAAT GGCTCAGTGC GCAAAGGGGC
  TTGCTGCCAA ATCTGATAAC CTAAGTTCAG TTCCCGGAAC CCACATGGAC TATCTGTGCC
  ACGGCATGTA TGAGACCGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323513534	CHEV_10_121022150	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250995151					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:121420999 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2289	CpG island 2289	1153 bp proximal
Rr402304	regulatory region 402304	778 bp upstream
Rr402305	regulatory region 402305	1632 bp upstream
Rr440247	regulatory region 440247	162 bp proximal
Rr440248	regulatory region 440248	1683 bp proximal
Tbk1	TANK-binding kinase 1	within coordinates
Tssr96043	transcription start site region 96043	1123 bp upstream
Tssr96044	transcription start site region 96044	1159 bp upstream
Tssr99623	transcription start site region 99623	779 bp downstream
Tssr99624	transcription start site region 99624	807 bp downstream
Tssr99625	transcription start site region 99625	828 bp downstream
Tssr99626	transcription start site region 99626	1616 bp downstream
Tssr99627	transcription start site region 99627	1636 bp downstream
Tssr99628	transcription start site region 99628	1719 bp downstream
Tssr99629	transcription start site region 99629	1747 bp downstream
Tssr99630	transcription start site region 99630	1775 bp downstream