rs250998092 SNP Detail

Summary

• ID
  rs250998092
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:7347748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGCATTG CTCTGGTCCA
  GCCTGACTGT ATCTTTAATA GTTGCTGAAT TTGCAAATAG TATGTTGAAA AGTGTGATTC
  GATTTGAAAA TCAGTACAGA TTCTCTCTTG TTACCATGTT TTGTTTTCCA GAGAGGATTA
  TAAAGATGAA AGAATGTCAT TAAACTGGTG AATAATTGTA CCATCTACAA AAAGCTTTGG
  Y
  TAAATTACTT TAGCTCAATA TAATTAGATT ACATTTCTAA TAGAGTGTTG TGTATTGGTC
  TCTCACTCCA TTTGTCTTTT ATTTGAGGTA GTAGTTTAAT ATCCAGTAAT AATGCAAGAT
  TTGGACTTTG CTTAGTCCAT GTGACCACTT CAAGATTTTA TGATAGTTAC AGCATGTTCT
  CTCTGCGATT TATCTCATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376560231	MGP_WTSI_9_7347748	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250998092					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376560231	MGP_WTSI_9_7347748	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:7347748 () rs orientation: forward

Symbol	Name	Function Class
Mmp12	matrix metallopeptidase 12	within coordinates
Tssr83683	transcription start site region 83683	1594 bp downstream
Tssr83684	transcription start site region 83684	338 bp downstream
Tssr83685	transcription start site region 83685	275 bp downstream
Tssr83686	transcription start site region 83686	226 bp downstream
Tssr83687	transcription start site region 83687	208 bp downstream
Tssr83688	transcription start site region 83688	455 bp upstream
Tssr83689	transcription start site region 83689	820 bp upstream
Tssr83690	transcription start site region 83690	856 bp upstream
Tssr83691	transcription start site region 83691	875 bp upstream
Tssr83692	transcription start site region 83692	906 bp upstream
Tssr83693	transcription start site region 83693	942 bp upstream
Tssr83694	transcription start site region 83694	968 bp upstream
Tssr83695	transcription start site region 83695	1040 bp upstream
Tssr83696	transcription start site region 83696	1095 bp upstream
Tssr83697	transcription start site region 83697	1154 bp upstream
Tssr83698	transcription start site region 83698	1309 bp upstream
Tssr83699	transcription start site region 83699	1359 bp upstream
Tssr83700	transcription start site region 83700	1407 bp upstream
Tssr83701	transcription start site region 83701	1452 bp upstream
Tssr83702	transcription start site region 83702	1489 bp upstream
Tssr83703	transcription start site region 83703	1972 bp upstream
Tssr88064	transcription start site region 88064	942 bp downstream
Tssr88065	transcription start site region 88065	1043 bp downstream