rs251005217 SNP Detail

Summary

• ID
  rs251005217
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:47741832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCGTCCGA GTCGCGTCCC
  CCTGGACCTC CCAGCCGCGA GGGCCGCAGT CCCCGGCGCC CGCTGTCTCT GCTTCTCTCT
  CGCAGTCCTC GGGAGGCAGT CTTCATTCCA GAGGCTCGAA CGGGGGGCGC ACGGGAGCAC
  CGGGACCGCC GCTGCGACAA CGCAGGAAGA GCCCCGTTGG GTGCTGGCGA CCGCGGCGCG
  S
  CGTCAGGCTT CCTCCTTCCG AGGCTGGCGG GGGCGCGGGA GGGTGGGGGC GCGTGCCGAC
  ACGCGTGGGT CCCCCGCCGC AGGCATACTC TTACTCACGG GCCGCGGTGG CTGCGGAGCC
  CGGCGATCGG CCCCCGCGCG AGGCCATCGC GGCTCGGGGA CTAGCGCGTT GCGCTCTGGC
  ACCGCCGAAA GCGGGACGGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss374556872	MGP_WTSI_8_48374151	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251005217					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss374556872	MGP_WTSI_8_48374151	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:47741832 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20325	CpG island 20325	1335 bp distal
Cpgi20326	CpG island 20326	within coordinates
Rr663192	regulatory region 663192	427 bp distal
Rr663193	regulatory region 663193	555 bp proximal
Stox2	storkhead box 2	within coordinates
Tssr2563	transcription start site region 2563	843 bp downstream
Tssr77334	transcription start site region 77334	378 bp downstream
Tssr81223	transcription start site region 81223	637 bp upstream
Tssr81224	transcription start site region 81224	502 bp upstream
Tssr81225	transcription start site region 81225	321 bp upstream
Tssr81226	transcription start site region 81226	526 bp downstream
Tssr81227	transcription start site region 81227	557 bp downstream
Tssr81228	transcription start site region 81228	597 bp downstream
Tssr81229	transcription start site region 81229	616 bp downstream