rs251005532 SNP Detail

Summary

• ID
  rs251005532
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:157334647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCACTAACA ACTTCACCCA
  AACCAAACCC AAGCAGAAGA AAACTAAGAG GGAATGTAAT TTTTACTGGA GACCCTTCTA
  ACAGATTCAT TTGAAAAAGC ATGTAGTTTG AACCAGGGAA GACAGGCATT CAGGCCAGCA
  CATGGTTTCA TCAGAATGAA GAACTTGACA GGATCCTGTT TGGAAAAAAA AAAAAAAAAA
  C
  AACAACAAAA AACAACAAAA AAACAACCAC CCTCAAGTTC AATGGTGGCT GAGGCTGGTT
  TAGACCCTCA CTCTGTACAG TGACTGCATA CCCTGGCAGG GGCCTTGCCT TGTTGGCTGG
  AATGCACGGC TAATGTGCAT GTAATTTCAA CTTTCACAGG AATTTAGGCA AGTTTGATTA
  TGGTTAGATG AAAGGAGACT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	FVB/NJ	LEWES/EiJ	LG/J	LP/J	NOD/ShiLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352061876	MGP_WTSI_1_159437208	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	FVB/NJ	LEWES/EiJ	LG/J	LP/J	NOD/ShiLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251005532					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352061876	MGP_WTSI_1_159437208	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:157334647 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm15486	predicted gene 15486			within coordinates
Rr421396	regulatory region 421396			812 bp distal
Rr421397	regulatory region 421397			257 bp distal
Rr421398	regulatory region 421398			within coordinates
Rr421399	regulatory region 421399			851 bp proximal
Sec16b	SEC16 homolog B, endoplasmic reticulum export factor			Intron
				Noncoding-Transcript-Variant
Tssr9592	transcription start site region 9592			301 bp downstream
Tssr9593	transcription start site region 9593			266 bp downstream