rs251009731 SNP Detail

Summary

• ID
  rs251009731
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:114270125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTGTAAT CTCAACCCTT
  GAGAGCTGGG GGGCTGGAGG TGAAGGCCAA CCTCAGATTC TGTGCTATGG GAGGCCCTGT
  CTTTTAAAAA GAAGAGGGGG CGGAGTTACT GTGAAATGAA AATAGTCCAG CCCAAGAGGG
  GAAAGGGTGC TATGCTGGCT TCAATTGTTT TTTTAAAAAA AGTTTGGGTT TAAATCATGC
  R
  CGCACACACA CAAATAGACG AGGTTTCAAA CACCTTTTAT AAAATAGGTT TTCAATCCTA
  ATTCTTAGTT TCTGGTAAGA ATGGGCTTTT AAACCTCCTT TTATCTTTTA AACCAGCTAA
  TGGGATTTGT TGCTGAAGAA AGGAACCACC ACAAGGTCTA TCCGCCCCCG GAGCAGGTGT
  TCACATGGAC CCAGATGTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366325830	MGP_WTSI_5_114582073	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251009731					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366325830	MGP_WTSI_5_114582073	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:114270125 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16310	CpG island 16310	210 bp distal
Gm73235	predicted gene, 73235	621 bp downstream
Gm73237	predicted gene, 73237	1350 bp upstream
Tssr48056	transcription start site region 48056	1688 bp downstream
Tssr48057	transcription start site region 48057	1620 bp downstream
Tssr48058	transcription start site region 48058	886 bp downstream
Tssr48059	transcription start site region 48059	844 bp downstream
Tssr48060	transcription start site region 48060	146 bp upstream
Tssr52695	transcription start site region 52695	1338 bp upstream
Tssr52696	transcription start site region 52696	467 bp upstream
Ung	uracil DNA glycosylase	within coordinates