rs251010378 SNP Detail

Summary

• ID
  rs251010378
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134069380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAG AAAGGAAAGA AGAGAAGAGA
  R
  GAGAGGAGAG GAGAGGAGAG GAGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	WSB/EiJ
ss640568021	FVB_NJ_4_133897984	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	A	A	A	A	A	A	A	G	G	A	A	G	G	G	A	G	A	A	A	G	G	G	A	G	A	A	G	G	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	WSB/EiJ
rs251010378					SNP	G	G	A	A	A	A	A	A	A	G	G	A	A	G	G	G	A	G	A	A	A	G	G	G	A	G	A	A	G	G	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss640568021	FVB_NJ_4_133897984	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134069380 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15035	CpG island 15035	853 bp proximal
Rr601645	regulatory region 601645	622 bp proximal
Slc30a2	solute carrier family 30 (zinc transporter), member 2	1112 bp upstream
Tssr39548	transcription start site region 39548	1074 bp upstream
Tssr39549	transcription start site region 39549	1129 bp upstream
Tssr39550	transcription start site region 39550	1424 bp upstream
Tssr39551	transcription start site region 39551	1454 bp upstream
Tssr39552	transcription start site region 39552	1529 bp upstream
Tssr39553	transcription start site region 39553	1563 bp upstream
Tssr39554	transcription start site region 39554	1614 bp upstream
Tssr39555	transcription start site region 39555	1813 bp upstream
Tssr39556	transcription start site region 39556	1933 bp upstream