rs251014813 SNP Detail

Summary

• ID
  rs251014813
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:76134072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCTCAGGG GAGAAGGATC
  ATACCAAGAG GTGAGGGTGC ACGTCTTCCC TTCTGTCCCG GCTCCCCTGG CATAGAGTAC
  CCGTGTCCCC TCCCCACCCT GCCTTCTGAG GGGCACGCAG GGCGGGGTCT CATTCTTGCG
  CTGGGCCCCA AGAGCAGAGA GGATGTCATG TTTCAAGGGA GGAGGCTCTC TCGTGCTGCC
  R
  TTGTTAAAAT GCCAATAAAA GGGTACCTTC TGCTTTCTGC TTCTCCTTGT CTCTCTTCAC
  TGCCACTTCC TCCAGGAGGC ATGGAGGGGC TTCAGCACCC CCTGCCCTGG CTGATGGTTA
  GTTCTGGACA GGCACTGACG ACAGCGGTTA ATGACAGTTA GCTAATCCAG TGTGTGCGCT
  GCTTCTTTTC TTGCTGTCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394611530	MGP_WTSI_15_76080302	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251014813					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394611530	MGP_WTSI_15_76080302	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76134072 () rs orientation: forward

Symbol	Name	Function Class
Grina	glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)	within coordinates
Mir6953	microRNA 6953	1614 bp downstream
Tssr131731	transcription start site region 131731	1949 bp downstream
Tssr131732	transcription start site region 131732	1919 bp downstream
Tssr131733	transcription start site region 131733	1883 bp downstream
Tssr131734	transcription start site region 131734	1854 bp downstream
Tssr131735	transcription start site region 131735	1800 bp downstream
Tssr131736	transcription start site region 131736	1730 bp downstream
Tssr131737	transcription start site region 131737	1574 bp downstream
Tssr131738	transcription start site region 131738	1400 bp downstream
Tssr131739	transcription start site region 131739	1374 bp downstream
Tssr131740	transcription start site region 131740	1309 bp downstream
Tssr131741	transcription start site region 131741	1248 bp downstream
Tssr131742	transcription start site region 131742	1060 bp downstream
Tssr131743	transcription start site region 131743	1030 bp downstream
Tssr131744	transcription start site region 131744	1011 bp downstream
Tssr131745	transcription start site region 131745	884 bp downstream
Tssr131746	transcription start site region 131746	830 bp downstream
Tssr131747	transcription start site region 131747	782 bp downstream
Tssr131748	transcription start site region 131748	606 bp downstream
Tssr131749	transcription start site region 131749	530 bp downstream
Tssr131750	transcription start site region 131750	383 bp downstream
Tssr131751	transcription start site region 131751	312 bp downstream
Tssr134961	transcription start site region 134961	1824 bp upstream
Tssr134962	transcription start site region 134962	1699 bp upstream
Tssr134963	transcription start site region 134963	522 bp upstream
Tssr134964	transcription start site region 134964	491 bp upstream
Tssr134965	transcription start site region 134965	466 bp upstream
Tssr134966	transcription start site region 134966	333 bp upstream
Tssr134967	transcription start site region 134967	29 bp downstream