rs251037981 SNP Detail

Summary

• ID
  rs251037981
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:53748539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCTCGGC GGGCCTGGCG
  GGGATCCCGG CGCAGCTTTG TTCCCCGTGC GTGGCCCGCG TCGCCTGTCC TCCCAGCCGC
  TGCCCTGGGC GCCGGAGCGC TTTGTCTGTG TGCGCTGCCC CCCGCGATTC TGCCCCCAGC
  CCTTTGTTTC GCCGCCTTAG GCTCTCTGTG GGAGCCGCTG CGCGCCCCGC ATCCCGTCTG
  Y
  ACCTCCACTC CGCCCGCTGT CCCTCCTCCC GTGCCCCTTT GTTGTATCCC TCTCTTCAGT
  AGCTGGGTGA CCTGCCATAG CCCTGGCACC AGATTACTGC CGTTCTCTTT CTTCCATTGT
  CTTTCTCGTG TGTATCCCCT CTCACCTTTT TCTCTTTGGT CCTCACCCCC CCCCCCCAAG
  GCTTTGTCTC CCCTATGTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364963864	MGP_WTSI_5_53982436	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251037981					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364963864	MGP_WTSI_5_53982436	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:53748539 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15869	CpG island 15869	within coordinates
Rbpj	recombination signal binding protein for immunoglobulin kappa J region	within coordinates
Rr611645	regulatory region 611645	1827 bp distal
Rr611646	regulatory region 611646	716 bp distal
Rr611647	regulatory region 611647	206 bp distal
Rr611648	regulatory region 611648	within coordinates
Rr611649	regulatory region 611649	293 bp proximal
Rr611650	regulatory region 611650	711 bp proximal
Tssr46226	transcription start site region 46226	1753 bp downstream
Tssr46227	transcription start site region 46227	846 bp downstream
Tssr46228	transcription start site region 46228	820 bp downstream
Tssr46229	transcription start site region 46229	764 bp downstream
Tssr46230	transcription start site region 46230	668 bp downstream
Tssr46231	transcription start site region 46231	529 bp downstream
Tssr46232	transcription start site region 46232	494 bp downstream
Tssr46233	transcription start site region 46233	475 bp downstream
Tssr46234	transcription start site region 46234	131 bp downstream
Tssr46235	transcription start site region 46235	36 bp upstream
Tssr46236	transcription start site region 46236	51 bp upstream
Tssr46237	transcription start site region 46237	203 bp upstream
Tssr46238	transcription start site region 46238	269 bp upstream
Tssr46239	transcription start site region 46239	332 bp upstream
Tssr46240	transcription start site region 46240	399 bp upstream
Tssr46241	transcription start site region 46241	720 bp upstream
Tssr51023	transcription start site region 51023	1932 bp upstream
Tssr51024	transcription start site region 51024	1005 bp upstream
Tssr51025	transcription start site region 51025	608 bp upstream