rs251081371 SNP Detail

Summary

• ID
  rs251081371
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134213214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGCGGTCG CCGGCGCAGA
  GCCGCTGCGC ACGCGCAAGC CAGGCTCCAG ACCCCCGGCG CGGCCCGCAA AGCAGGGCCC
  TCAGGTGCGT ATCCCGCCGC CGCTTCCCTC ACAACTTCCG CTTCCGGGAG TCCCCGCCGG
  GGCAGAGCGA TCTCTCGGGG TGCGTGGCGG GACCTTCGGG CGCCCGGTGG TCAGCGCCGA
  Y
  CCCCATTTTC CCTACCGCGA TCGGGCCGTG AAGAGTGGGG GGCGGGGCGG GGAAGACGTG
  GGGTTAGGCG ACTTTCGCAC GCCAGGCGCG CACCAAAATC TCGCTTTCGA TTGGTTGTGA
  CGGGGCGAGG AGGCGGGGAA AGCTGCGCCC GGTGCGTGCC GAGGTCACGC GCCACCTGAC
  GTACCTGCGC TGTGTTTAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366804249	MGP_WTSI_5_134660245	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251081371					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366804249	MGP_WTSI_5_134660245	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134213214 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16715	CpG island 16715	within coordinates
Gm73509	predicted gene, 73509	250 bp downstream
Gtf2ird2	GTF2I repeat domain containing 2	within coordinates
Rr110116	regulatory region 110116	1387 bp proximal
Rr124476	regulatory region 124476	within coordinates
Rr399398	regulatory region 399398	within coordinates
Tssr49084	transcription start site region 49084	329 bp downstream
Tssr53607	transcription start site region 53607	23 bp downstream
Tssr53608	transcription start site region 53608	52 bp downstream