rs251081926 SNP Detail

Summary

• ID
  rs251081926
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34613998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAGACCCGA GACGCGCGGC GGCGGCGGCG GCCAGACAAC
  ACCCGGAAGT GCACCCCGCT GCACTTCCGC CGGCGGCTCG CGCGGGGGCG TGGGGGCGCG
  Y
  GAGGCCGGGC CGGGCCGGGC CGGCGTCCTT CCTTCCGCGG CTGAGGGGGG CCAGCTGGGG
  ACGTGCGGGG CAGCTCCGGC CCGGAGTCCC CGCGGTCTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322575460	CHEV_8_35209898	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251081926					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34613998 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20243	CpG island 20243	within coordinates
Leprotl1	leptin receptor overlapping transcript-like 1	105 bp upstream
Rr661962	regulatory region 661962	1480 bp distal
Rr661963	regulatory region 661963	within coordinates
Rr661964	regulatory region 661964	179 bp proximal
Tssr76861	transcription start site region 76861	1595 bp downstream
Tssr76862	transcription start site region 76862	507 bp downstream
Tssr76863	transcription start site region 76863	477 bp downstream
Tssr76864	transcription start site region 76864	460 bp downstream
Tssr80896	transcription start site region 80896	683 bp upstream
Tssr80897	transcription start site region 80897	257 bp upstream
Tssr80898	transcription start site region 80898	126 bp upstream
Tssr80899	transcription start site region 80899	92 bp upstream
Tssr80900	transcription start site region 80900	76 bp upstream
Tssr80901	transcription start site region 80901	34 bp upstream
Tssr80902	transcription start site region 80902	130 bp downstream
Tssr80903	transcription start site region 80903	174 bp downstream