rs251087718 SNP Detail

Summary

• ID
  rs251087718
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85431488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGCGCTTG ATCCATGATC
  CTGTTAACCG CGACAACGAA GACTCAGGCA CTCTTGCATT TGTTTTTCTT TATTTCTTTA
  TTTCACATAC ACATTAGCCA TTCAATGGAG AAGCCGAAGA GAGTCAGGCA AAGATGGTAT
  AACAGAAGCG CAGTGACTGG GGTGGGGCGG GGCGGGGCGG GCGGAGAGGG GACAGACGGG
  Y
  TGGCTGCCTA CTTGCATTCC GCTAGGACAC TGAAAACCCA GAAAACAAAA CAGACAGTAA
  ACTACCCTTG TTTCTTATGT ATCTCAGTGC AGAGACGGGG GAGGGGAATT GGAGGGCAGA
  GAAGGGAGAC CAGGCTGAAA GAGGAGCAGA GGGAAGGGAC GCTAAGGGGG AAGCACACCA
  AATCCATTAG TACTATATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss375404556	MGP_WTSI_8_87228758	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs251087718					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375404556	MGP_WTSI_8_87228758	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85431488 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20708	CpG island 20708	267 bp distal
Cpgi20709	CpG island 20709	204 bp proximal
Cpgi20710	CpG island 20710	1718 bp proximal
Lyl1	lymphoblastomic leukemia 1	within coordinates
Nfix	nuclear factor I/X	within coordinates
Rr187001	regulatory region 187001	within coordinates
Rr368567	regulatory region 368567	233 bp downstream
Tssr78439	transcription start site region 78439	1444 bp downstream
Tssr82117	transcription start site region 82117	267 bp downstream
Tssr82118	transcription start site region 82118	303 bp downstream
Tssr82119	transcription start site region 82119	331 bp downstream
Tssr82120	transcription start site region 82120	408 bp downstream
Tssr82121	transcription start site region 82121	955 bp downstream
Tssr82122	transcription start site region 82122	1190 bp downstream
Tssr82123	transcription start site region 82123	1339 bp downstream
Tssr82124	transcription start site region 82124	1368 bp downstream
Tssr82125	transcription start site region 82125	1452 bp downstream
Tssr82126	transcription start site region 82126	1641 bp downstream