rs251088088 SNP Detail

Summary

• ID
  rs251088088
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:9811395 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATGTCAAG CCTCCCTGGA
  CCCGCCCCCT ACACACGGGT ACGCACAAGC AACATACAAT CTCATGCCGT GTGAAATGCT
  GAATTCTGGA GAGTAGGAGC TCTGCCTTCC ACCCCCACCC TAACACCCCG CAAGTGGGCC
  AGCGCGTGGG AGCTGGCAAA GAACGTGCGG GGGTGGGGGT AGGCTCCCAA AAAGCTCTCA
  K
  ATAGATGAGG AGTGTGCATC CCCTCCTCAG TCTTTCCACT GCAGACCCTG GAGCCAAATC
  TTAGATGCAC GTGGGCAGTG GGCTGCACAC GCTAACAGAC ACGCGCGCTT TTCTGCGCAT
  ATCCCCAGGC CGCCTTAGAG ATGCCCACGG CCAGCTGGAG CCTTCAAACG TCCTCAGACG
  GTGTGCACAC AAGCACTGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395370667	MGP_WTSI_16_9993624	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251088088					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395370667	MGP_WTSI_16_9993624	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:9811395 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7945	CpG island 7945	within coordinates
Grin2a	glutamate receptor, ionotropic, NMDA2A (epsilon 1)	within coordinates
Rr511422	regulatory region 511422	508 bp distal
Rr511423	regulatory region 511423	357 bp proximal
Rr511424	regulatory region 511424	493 bp proximal
Rr511425	regulatory region 511425	1041 bp proximal
Rr511426	regulatory region 511426	1969 bp proximal
Tssr139893	transcription start site region 139893	1016 bp downstream
Tssr139894	transcription start site region 139894	1469 bp downstream
Tssr139895	transcription start site region 139895	1513 bp downstream
Tssr139896	transcription start site region 139896	1768 bp downstream
Tssr139897	transcription start site region 139897	1784 bp downstream
Tssr139898	transcription start site region 139898	1817 bp downstream
Tssr139899	transcription start site region 139899	1847 bp downstream
Tssr139900	transcription start site region 139900	1881 bp downstream
Tssr139901	transcription start site region 139901	1977 bp downstream
Tssr139902	transcription start site region 139902	1995 bp downstream