rs251088178 SNP Detail

Summary

• ID
  rs251088178
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164677663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGATTGCAG GTCTGGGTTG
  TAGGTCAAGG GAGGCTCCCC CTCGCTCTCG CCCTTCGGAT GAGCCGAGCA TGCTTCGTGT
  TTCGCAGGGG CTGGCTGTGG GCAATGGACT TGCCTCCTAT GAGCAGAACG ACAACTCCCT
  GGTCTACTTT GCCTACTACC ATGGCCTTCT GGGGAACAGG TAAAGGAAGA GGGACCGTTG
  G
  GCAATGTCTA AGGCGGGGCA GGTCATACGA TCTCAGCACA GGATTCCCAC TCTGGTTTAT
  GTGTAGGCCG GAGCTGGAAT TGACCAAAGG GCTTGATGCT TTAAAGGCCA AGCCTAGGGT
  TTAAAGAAAC TAAGGCAGCT AGACATGGTG ATACACACCT GTAACCTGGC ACTTGAAAAC
  GGGCAGAAGA ATCCTGACTT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356441831	MGP_WTSI_2_164661243	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251088178					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356441831	MGP_WTSI_2_164661243	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164677663 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12674	CpG island 12674	1326 bp distal
Ctsa	cathepsin A	within coordinates
Rr367364	regulatory region 367364	1872 bp downstream
Rr569730	regulatory region 569730	1797 bp distal
Tssr21659	transcription start site region 21659	1968 bp downstream
Tssr21660	transcription start site region 21660	1931 bp downstream
Tssr21661	transcription start site region 21661	1891 bp downstream
Tssr21662	transcription start site region 21662	1695 bp downstream
Tssr21663	transcription start site region 21663	1646 bp downstream
Tssr21664	transcription start site region 21664	1605 bp downstream
Tssr21665	transcription start site region 21665	859 bp downstream
Tssr21666	transcription start site region 21666	544 bp downstream
Tssr21667	transcription start site region 21667	463 bp downstream
Tssr21668	transcription start site region 21668	92 bp downstream
Tssr21669	transcription start site region 21669	51 bp downstream
Tssr21670	transcription start site region 21670	668 bp upstream
Tssr21671	transcription start site region 21671	1257 bp upstream
Tssr21672	transcription start site region 21672	1458 bp upstream
Tssr21673	transcription start site region 21673	1625 bp upstream
Tssr27547	transcription start site region 27547	1660 bp downstream
Tssr27548	transcription start site region 27548	1710 bp downstream