rs251095807 SNP Detail

Summary

• ID
  rs251095807
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:162396829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAGAGTGGG GGCATATGTT CCTGGCCCAA
  AAGCAATCAA AATAAGTAGC CAAATTAAGG CATTATGACT AAATACAAAG AAAAATAACA
  GATTACTCAT AAGAATAATA AGGCATGTAT GAATGACATG TCCATTGTAG CTCTACTATC
  R
  TATTTCCTTA TGCTGTTAAC AGACAAGGAC ATTAACTAGC TAAGGAAACA AGGCAAGGAA
  GTTCGGCATA GTAAGCAAAT ATACGGATAA AATCATCAAC TGAAggggct ggagagacgg
  ctcagtgaga aaaggcactt atccttcttg                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320082937	CHEV_1_164499391	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251095807					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:162396829 () rs orientation: forward

Symbol	Name	Function Class
Cpgi932	CpG island 932	1002 bp proximal
Rr396472	regulatory region 396472	1144 bp upstream
Rr396473	regulatory region 396473	1882 bp upstream
Rr421988	regulatory region 421988	765 bp proximal
Rr421989	regulatory region 421989	1256 bp proximal
Rr421990	regulatory region 421990	1334 bp proximal
Rr421991	regulatory region 421991	1977 bp proximal
Tssr9715	transcription start site region 9715	1337 bp upstream
Tssr9716	transcription start site region 9716	1407 bp upstream
Tssr9717	transcription start site region 9717	1427 bp upstream
Tssr14622	transcription start site region 14622	1022 bp downstream
Vamp4	vesicle-associated membrane protein 4	1255 bp upstream