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rs251102259 SNP Detail
Summary
  • ID
    rs251102259
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:44129990 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGTTTTCTCT TCAGCCCATC
TCCTTTCTAG CTCCTTCTCT ATTCCTCATC TTCCTTTCTC TGTACCCTCT TCCCCCACTT
CCTCATCCTC TCCTCTCTTC CTTCTTGCCC TCATCTTTTC CTGCAGCTCC AGTTCTCCCA
TCATGTTTCT CTTGCTCTTC CTTCTCCATC CATCACTTTC CTCTTCCTTC CAATTCTCAT
Y
TCCTTCCTCC TTTTCCTTAG TCCTGTCTAC CACTACCTCT TCCTCCTCCT CTCCCACTGT
CTTTTCCTGT GCTCACTCCC TTGCCCACTC ACCTTCTTTC AAGTTTCTCC TTTATCTTCT
TTACTCCTGG ACAACCCCCC AGTATCATCT TTTTAGTATT TTCCTCCCCC TTTTCTTCTT
CCACCAGATC TCTCCTTCAC                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss371156141 MGP_WTSI_7_51735936 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs251102259 SNP T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss371156141 MGP_WTSI_7_51735936 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44129990 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Tssr2227 transcription start site region 2227 1546 bp downstream
Tssr2228 transcription start site region 2228 483 bp downstream
Tssr2229 transcription start site region 2229 208 bp downstream
Tssr2230 transcription start site region 2230 25 bp downstream
Tssr2231 transcription start site region 2231 100 bp upstream
Tssr2232 transcription start site region 2232 275 bp upstream
Tssr2233 transcription start site region 2233 308 bp upstream
Tssr2234 transcription start site region 2234 467 bp upstream
Tssr2235 transcription start site region 2235 1101 bp upstream
Tssr66281 transcription start site region 66281 1977 bp downstream
Tssr66282 transcription start site region 66282 1960 bp downstream
Tssr66283 transcription start site region 66283 1946 bp downstream
Tssr66284 transcription start site region 66284 1934 bp downstream
Tssr66285 transcription start site region 66285 1920 bp downstream
Tssr66286 transcription start site region 66286 1881 bp downstream
Tssr66287 transcription start site region 66287 1845 bp downstream
Tssr66288 transcription start site region 66288 1820 bp downstream
Tssr66289 transcription start site region 66289 1738 bp downstream
Tssr66290 transcription start site region 66290 1700 bp downstream
Tssr66291 transcription start site region 66291 1674 bp downstream
Tssr66292 transcription start site region 66292 1642 bp downstream
Tssr66293 transcription start site region 66293 1620 bp downstream
Tssr66294 transcription start site region 66294 1596 bp downstream
Tssr66295 transcription start site region 66295 1331 bp downstream
Tssr66296 transcription start site region 66296 1160 bp downstream
Tssr66297 transcription start site region 66297 1136 bp downstream
Tssr66298 transcription start site region 66298 1081 bp downstream
Tssr66299 transcription start site region 66299 1061 bp downstream
Tssr66300 transcription start site region 66300 1038 bp downstream
Tssr66301 transcription start site region 66301 1022 bp downstream
Tssr66302 transcription start site region 66302 981 bp downstream
Tssr66303 transcription start site region 66303 972 bp downstream
Tssr66304 transcription start site region 66304 967 bp downstream
Tssr66305 transcription start site region 66305 928 bp downstream
Tssr66306 transcription start site region 66306 874 bp downstream
Tssr66307 transcription start site region 66307 825 bp downstream
Tssr66308 transcription start site region 66308 808 bp downstream
Tssr66309 transcription start site region 66309 758 bp downstream
Tssr66310 transcription start site region 66310 689 bp downstream
Tssr66311 transcription start site region 66311 666 bp downstream
Tssr66312 transcription start site region 66312 647 bp downstream
Tssr66313 transcription start site region 66313 637 bp downstream
Tssr66314 transcription start site region 66314 619 bp downstream
Tssr66315 transcription start site region 66315 612 bp downstream
Tssr66316 transcription start site region 66316 547 bp downstream
Tssr66317 transcription start site region 66317 531 bp downstream
Tssr66318 transcription start site region 66318 490 bp downstream
Tssr66319 transcription start site region 66319 462 bp downstream
Tssr66320 transcription start site region 66320 438 bp downstream
Tssr66321 transcription start site region 66321 414 bp downstream
Tssr66322 transcription start site region 66322 398 bp downstream
Tssr66323 transcription start site region 66323 360 bp downstream
Tssr66324 transcription start site region 66324 307 bp downstream
Tssr66325 transcription start site region 66325 266 bp downstream
Tssr66326 transcription start site region 66326 256 bp downstream
Tssr66327 transcription start site region 66327 236 bp downstream
Tssr66328 transcription start site region 66328 218 bp downstream
Tssr66329 transcription start site region 66329 179 bp downstream
Tssr66330 transcription start site region 66330 166 bp downstream
Tssr66331 transcription start site region 66331 152 bp downstream
Tssr66332 transcription start site region 66332 119 bp downstream
Tssr66333 transcription start site region 66333 84 bp downstream
Tssr66334 transcription start site region 66334 78 bp downstream
Tssr66335 transcription start site region 66335 67 bp downstream
Tssr66336 transcription start site region 66336 53 bp downstream
Tssr66337 transcription start site region 66337 37 bp downstream
Tssr66338 transcription start site region 66338 10 bp upstream
Tssr66339 transcription start site region 66339 61 bp upstream
Tssr66340 transcription start site region 66340 106 bp upstream
Tssr66341 transcription start site region 66341 151 bp upstream
Tssr66342 transcription start site region 66342 213 bp upstream
Tssr66343 transcription start site region 66343 245 bp upstream
Tssr66344 transcription start site region 66344 390 bp upstream
Tssr66345 transcription start site region 66345 423 bp upstream
Tssr66346 transcription start site region 66346 479 bp upstream
Tssr66347 transcription start site region 66347 517 bp upstream
Tssr66348 transcription start site region 66348 558 bp upstream
Tssr66349 transcription start site region 66349 582 bp upstream
Tssr66350 transcription start site region 66350 610 bp upstream
Tssr66351 transcription start site region 66351 618 bp upstream
Tssr66352 transcription start site region 66352 654 bp upstream
Tssr66353 transcription start site region 66353 728 bp upstream
Tssr66354 transcription start site region 66354 742 bp upstream
Tssr66355 transcription start site region 66355 769 bp upstream
Tssr66356 transcription start site region 66356 786 bp upstream
Tssr66357 transcription start site region 66357 800 bp upstream
Tssr66358 transcription start site region 66358 812 bp upstream
Tssr66359 transcription start site region 66359 838 bp upstream
Tssr66360 transcription start site region 66360 850 bp upstream
Tssr66361 transcription start site region 66361 876 bp upstream
Tssr66362 transcription start site region 66362 908 bp upstream
Tssr66363 transcription start site region 66363 925 bp upstream
Tssr66364 transcription start site region 66364 958 bp upstream
Tssr66365 transcription start site region 66365 978 bp upstream
Tssr66366 transcription start site region 66366 998 bp upstream
Tssr66367 transcription start site region 66367 1026 bp upstream
Tssr66368 transcription start site region 66368 1048 bp upstream
Tssr66369 transcription start site region 66369 1082 bp upstream
Tssr66370 transcription start site region 66370 1124 bp upstream
Tssr66371 transcription start site region 66371 1549 bp upstream
Tssr66372 transcription start site region 66372 1712 bp upstream
Tssr72201 transcription start site region 72201 1615 bp upstream
Tssr72202 transcription start site region 72202 758 bp upstream
Tssr72203 transcription start site region 72203 378 bp upstream
Tssr72204 transcription start site region 72204 209 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory