rs251114377 SNP Detail

Summary

• ID
  rs251114377
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:106362248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGGACTCA AGATGTTTAA
  ACACATTTGC CTTAGTTACT GACATCTGAA CAGTGGGATC TTACATGCTT CTAACTTTCC
  GATTCTTTTG GGGGGAATAA ACAATATCTA TTGATAATGG ACCAGCATAC CCACAACACA
  GCCCAGATGT ATATGAATAG GGCAGAAGCT TGCTGCCAGG TGCATTTGTT ATCCAAACAG
  Y
  TAAAGCAAGA GAACTGGGAC TACAATCCCG AGTCACATTC CAAGGCTATG GGGGGCGGGG
  AGAGAAGATG ATTAGAACAC CTGCCAATAG GGTCTTCCCG GGAAAGGGAA GGGATTAAGT
  ACCACCGACT GGGAACCGAA ATAAAAAGAA CAGTCTTAAA AACTTAGACG TTCACGGTGC
  CAAATACAGC TAAACACGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375916391	MGP_WTSI_8_108159516	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251114377					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375916391	MGP_WTSI_8_108159516	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106362248 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20943	CpG island 20943	61 bp proximal
Ctcf	CCCTC-binding factor	952 bp upstream
Gm5914	predicted gene 5914	within coordinates
Gm38384	predicted gene, 38384	745 bp downstream
Rr173462	regulatory region 173462	1448 bp distal
Rr185893	regulatory region 185893	within coordinates
Tssr79169	transcription start site region 79169	165 bp upstream
Tssr79170	transcription start site region 79170	872 bp upstream
Tssr79171	transcription start site region 79171	893 bp upstream
Tssr79172	transcription start site region 79172	974 bp upstream
Tssr79173	transcription start site region 79173	1310 bp upstream
Tssr82678	transcription start site region 82678	744 bp upstream
Tssr82679	transcription start site region 82679	538 bp downstream
Tssr82680	transcription start site region 82680	1700 bp downstream
Tssr82681	transcription start site region 82681	1747 bp downstream
Tssr82682	transcription start site region 82682	1787 bp downstream