rs251129479 SNP Detail

Summary

• ID
  rs251129479
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:194815549 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTTCCCT GAGTCCTTGA
  TGGGTTTAGC TCCTGGCTGA TATTTACTTC CAACAATGCT CCTCTTCTCT CACTCCTCAT
  TGGCTTCAAA GATTACAGAA ACTTTTTTCC ACATGCTTGG CTTCACCGTT CCTTAAATTA
  TCTTTGCCTA TGATCTTGTC CTCCACTCTA CTATGCCACC AAGGCTCATG AGAATATCCT
  R
  GAACTGTCAT TATAACTGTG TCCTCTCCAT GAGCTTAACT ATCCCTCTTA ACCACAAGTC
  CTACCCTTCT GGTTCACTCC CAGTGTCCTG ATTCTCAAAA TCTCCATTTC ACAGTGTCTG
  CAAACCCATA GACCTGCCAC AACTGGTCTC TTGCTAGATT AAGTTTGTGC TCCATCCTTA
  CAGTCACCAT TTTATATACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352899718	MGP_WTSI_1_196959435	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	G	G	A	A	G	G	A	A	G	G	G	G	A	A	A	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251129479					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	G	G	A	A	G	G	A	A	G	G	G	G	A	A	A	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352899718	MGP_WTSI_1_196959435	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:194815549 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1251	CpG island 1251	1871 bp distal
Cr1l	complement C3b/C4b receptor 1 like	1671 bp upstream
Gm32313	predicted gene, 32313	within coordinates
Rr29235	regulatory region 29235	748 bp distal
Rr372684	regulatory region 372684	1333 bp downstream
Tssr383	transcription start site region 383	1812 bp upstream
Tssr10864	transcription start site region 10864	1597 bp downstream
Tssr15870	transcription start site region 15870	1834 bp upstream
Tssr15871	transcription start site region 15871	1788 bp upstream
Tssr15872	transcription start site region 15872	1737 bp upstream
Tssr15873	transcription start site region 15873	1707 bp upstream
Tssr15874	transcription start site region 15874	1653 bp upstream