rs251132555 SNP Detail

Summary

• ID
  rs251132555
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:3673427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGAGCTAG AAGAATTTAA
  GCAGAAGATC CGGAAGCAGA AAGAAGAGAG ACTTCTTCAA GCTGCCCAGC AGAGCTCCTG
  AGACCTTCAG TTCCTCAAGT CCCAGCTCCC TTCCCCACCA CAGAAAATAA CACACACTCA
  ACTCTTTGTT GCTAGTGCCA AGTGTTTTAT TGTTTTCAGG GGCCAGTGGG AGGCCCAGGA
  Y
  GGCTAGAACT CTCAAGGAGC TTGTGTCTGG GGCTGGGGGC TGCTGTTCCT GCGGAAGCTG
  AGTGCAGCAG GATCCTGAGG GGTGAGCAGG GGTTGAGGGC TGAGGGTCCC AGGTCGTTTC
  TGCATTCCAT CCTGGGGATG AAGAAGGGTC AGACGGAGGG AGGGGACCAA GGAAAGTGCA
  AGTCAGAAGT GCCTCCAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373511982	MGP_WTSI_8_3623427	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251132555					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373511982	MGP_WTSI_8_3623427	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:3673427 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20029	CpG island 20029	1708 bp distal
Pcp2	Purkinje cell protein 2 (L7)	within coordinates
Pet100	PET100 homolog	within coordinates
Rr658949	regulatory region 658949	1815 bp distal
Rr658950	regulatory region 658950	1960 bp distal
Rr658951	regulatory region 658951	417 bp distal
Tssr76075	transcription start site region 76075	1934 bp downstream
Tssr76076	transcription start site region 76076	1844 bp downstream
Tssr76077	transcription start site region 76077	1818 bp downstream
Tssr80203	transcription start site region 80203	83 bp downstream
Tssr80204	transcription start site region 80204	1142 bp downstream
Tssr80205	transcription start site region 80205	1232 bp downstream
Tssr80206	transcription start site region 80206	1494 bp downstream
Tssr80207	transcription start site region 80207	1543 bp downstream
Tssr80208	transcription start site region 80208	1562 bp downstream
Tssr80209	transcription start site region 80209	1598 bp downstream
Tssr80210	transcription start site region 80210	1779 bp downstream
Tssr80211	transcription start site region 80211	1819 bp downstream
Tssr80212	transcription start site region 80212	1847 bp downstream
Tssr80213	transcription start site region 80213	1862 bp downstream