rs251137044 SNP Detail

Summary

• ID
  rs251137044
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126623564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACCACGTC CCACTTCATT
  CTCCCAAGCA CACCCATGAG GTTGAATTTC TGGTAGACGG TCTCCTGTGA ACCATGGCAC
  ATAATTTAGT GGTGGTGTTT CCAATGCTGT TGTACTTGCC CCTTAAAGAG TTCTCTCTAC
  TCGCCACAAG CTCTTAGCTG CAGCACCCTT GACCCACATC GGTGAAAAAA AACCCAACAG
  Y
  TCTGTGCCCC CCTTTTTAGT CCCTGCCCTC CTGGCACCCC TTAGCATGTA CCTTTGTTGC
  AGAGCTCACA GACATGGTGA GGGCCCTGGC TGTGCACCTT CATGTGGTCG GAAATATAAG
  CCGAGCTCAG CATCTTGCCA CAGACATGAC ATGGCACCTT CTCCTCGTGT CGGACTGTGT
  GCGCTCGGAG GCGATCCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373079240	MGP_WTSI_7_134167906	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251137044					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373079240	MGP_WTSI_7_134167906	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126623564 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19727	CpG island 19727	788 bp proximal
Gm31749	predicted gene, 31749	879 bp upstream
Maz	MYC-associated zinc finger protein (purine-binding transcription factor)	within coordinates
Rr166710	regulatory region 166710	within coordinates
Rr368440	regulatory region 368440	within coordinates
Tssr74905	transcription start site region 74905	507 bp downstream
Tssr74906	transcription start site region 74906	689 bp downstream
Tssr74907	transcription start site region 74907	754 bp downstream
Tssr74908	transcription start site region 74908	1154 bp downstream
Tssr74909	transcription start site region 74909	1451 bp downstream
Tssr74910	transcription start site region 74910	1485 bp downstream
Tssr74911	transcription start site region 74911	1553 bp downstream
Tssr74912	transcription start site region 74912	1742 bp downstream
Tssr74913	transcription start site region 74913	1835 bp downstream
Tssr74914	transcription start site region 74914	1856 bp downstream
Tssr74915	transcription start site region 74915	1904 bp downstream
Tssr74916	transcription start site region 74916	1941 bp downstream