rs251155679 SNP Detail

Summary

• ID
  rs251155679
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:95392073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAACACTTA ATAATCCAAA
  TCAGTGCTTT CTAGTTCCTT AAAAAAAAGG GAGCTGGAAG CGGTTGGCAC ATGCCTGTAA
  TCCCAACTCT GGGAAATACA AGGAAGGAGC AGCAGGATGC TGAAGGTTAA AGTTCAAGCC
  AGCCTGGGCT ACGGGAGACC CAGCTCAAAA ACCTAGTACG CAGGATGGGT GGATGATCTA
  Y
  ATAGACTTAG AAACTGAAGT AAGATTTACT AACATTTACA GTAACTCCAT CTTTCTATCA
  GCCCTATAAA AGAATTTTTT TCCTGTAATA AGATAAGAAA ACCTGAGGCT GAAGAGATTA
  GGTATCGTAT TTGTTTTCAA AACCTATAAC CTCGCCATTC CATTACAACA CTTTCCATTA
  CATGGAAAAA TCCTGGCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323100826	CHEV_9_95410439	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251155679					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95392073 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22151	CpG island 22151	1239 bp proximal
Gm28424	predicted gene 28424	1257 bp upstream
Rr206888	regulatory region 206888	327 bp proximal
Rr383784	regulatory region 383784	1381 bp upstream
Tssr86548	transcription start site region 86548	1247 bp upstream
Tssr90919	transcription start site region 90919	1837 bp downstream
Tssr90920	transcription start site region 90920	1877 bp downstream
U2surp	U2 snRNP-associated SURP domain containing	within coordinates