rs251157596 SNP Detail

Summary

• ID
  rs251157596
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156045965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGTCACC TTTCACTCTT
  TTTTGGAGTG AGAATTGAGG GCCACTATTG TAGAACATTG CGTTCTGTTT ACCAGGACCC
  ATACCTACTG GGACCAACCA GCGTGTGTTA GGGATGCAGC TCCAGTCCCT TCATAGAGCA
  GTTGGAACCA CACCTGGCTG TTTGTAGCCA CGGCTTTTAC CAGTTGGAGG CTATCTGGCT
  R
  CTGGGAATCC TGGACCAGTC TCAAGGGCCA CTACCTCGTA ATCACTGAGC TCAAGGTACT
  CATTGGCTTG GCTTGTCCTT AGCTAGCCCA ACTTTGATCT TGAAGGGCCT TTCTCTGGGG
  ACCTGACACT GTCACTCACG AGGACTGGGG GGGTGTGGGG GGGGAATTGT ATTGGTCAGA
  GATGTACAGG GACCAGTTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321444087	CHEV_4_155335617	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251157596					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156045965 () rs orientation: forward

Symbol	Name	Function Class
C1qtnf12	C1q and tumor necrosis factor related 12	810 bp upstream
Cpgi15495	CpG island 15495	796 bp proximal
Gm42365	predicted gene, 42365	1236 bp upstream
Gm68249	predicted gene, 68249	within coordinates
Rr606617	regulatory region 606617	1776 bp distal
Rr606619	regulatory region 606619	320 bp proximal
Rr606620	regulatory region 606620	1605 bp proximal
Rr606621	regulatory region 606621	1913 bp proximal
Tssr40744	transcription start site region 40744	784 bp upstream
Tssr40745	transcription start site region 40745	834 bp upstream
Tssr40746	transcription start site region 40746	903 bp upstream
Tssr40747	transcription start site region 40747	1033 bp upstream
Ube2j2	ubiquitin-conjugating enzyme E2J 2	1904 bp downstream