rs251162182 SNP Detail

Summary

• ID
  rs251162182
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:115819634 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACCATGTA TCGCCTCAAC
  AAAATCGCAT ACGAGTTGAG CCCGTGTCGA GAAATCCTGA GGTCCTAATT CTGTGTGTAC
  CGTTGTGGCG GCAGGTGTTT GTTTTGGCTT GGTTGTCCCT AAGTGCCAGC TTGAGTGAGC
  CGGCATAAGT GGCCTGCTGG CTCTCCCACT GAGCATATAC TAATAATAGT TGGGCTTCGC
  R
  AGCTATGTTG CAGATTGCCT GAGTCCAGAA CTGTGTGCAG ATCTTCTTGA TTAAATATTG
  TGCTATCCTA GTTGATTATA TTTGCAGTAA GTCCTCCCTA AGGCCACATA GCACCATGGG
  ACTCGAAGGG CAGGTGGTGA CAGCACTGTG TCCATGCCAG CCTTCTAAAA GCTGCTGCTT
  TTAATTTCAT GCCTAACATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320893981	CHEV_3_115728903	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251162182					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115819634 () rs orientation: forward

Symbol	Name	Function Class
Extl2	exostosin-like glycosyltransferase 2	Intron
Rr583641	regulatory region 583641	within coordinates