rs251166509 SNP Detail

Summary

• ID
  rs251166509
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117584170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTACTTTA GTTTGTGTTG
  CCATAAGACC AGCACACGTT CAACTATTCG TCCATTTCAT CTATAGTTAC TTGAATTTAT
  TATAAACATT AGCTTTTCCA TTTTCTCTCT GCTGCTTGTT GTGCTGGTTG TTTTGTTTTG
  TTTTGTTTTG TTTTGTTTTT TTGTCAACTT GACACAAGCT AGAGTCAATT TGGGAAGAGA
  R
  ACGCTCAATT AAGAAACTGC TGCCAGCAAG TCAGCCAGAA GATGAGCCCG TGGGACATTT
  TTTTCAAATG TTACTCCATG TGGGAGGCTC AGCTTACTGG AAAGTGCCAT CTTTCTGTAG
  GTGGTTCTGG GTTAGATCAA GCAGGCTGAC CAAACCCTAG GAAGCAAGCT GCCAGGAAGC
  AGTTACTAGA GGGCCTCTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323499196	CHEV_10_117185321	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251166509					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117584170 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2239	CpG island 2239	1610 bp distal
Gm66856	predicted gene, 66856	242 bp downstream
Rr439611	regulatory region 439611	1774 bp distal
Rr439612	regulatory region 439612	1424 bp distal
Slc35e3	solute carrier family 35, member E3	1907 bp upstream
Tssr99471	transcription start site region 99471	1915 bp upstream
Tssr99472	transcription start site region 99472	1847 bp upstream