rs251182540 SNP Detail

Summary

• ID
  rs251182540
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:135146919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAGGGGA GGGGGTGGAA
  AATGGAGGTA AGAGGGGCGG GGACAGGGAA ACCTTGATTG CGGACTGGGT TTCTCAGGTG
  GAAGGTATCT GGTGAGGGCA GTTAGACCGA ACGAGGGTGG GGGGAAGAGA GGAGGGGAAA
  GAGGGAAGTG GGGAGAGGGA GAGCGGGAGG GGGCAAGAGT GGACGGAGGG GGGGTGGGAT
  G
  GGGAGGGCGT AAGCAAACGG TGAGGAGACC TTTGTGCACA GCACCTGCCC ATCTACCAAG
  TCTTCCATCT ACCACCACCT CCTCCTCCTC CTCCTCCTCC TCCTCCCCCT CCCCCTCCCC
  TCCCCCCTCG CTTCCTAGAA ATCATTGCAT TCCCGTATTC TGCAGGAAGC AGCAAAGAAG
  AGAAGCAGAC ACAAGATGAA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss404674988	MGP_WTSI_X_132780709	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs251182540					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404674988	MGP_WTSI_X_132780709	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:135146919 () rs orientation: forward

Symbol	Name	Function Class
Gm39535	predicted gene, 39535	1153 bp upstream
Rr693756	regulatory region 693756	1156 bp distal
Rr693757	regulatory region 693757	1081 bp distal
Rr693758	regulatory region 693758	477 bp distal
Tceal9	transcription elongation factor A like 9	within coordinates
Tssr162036	transcription start site region 162036	1068 bp downstream
Tssr162037	transcription start site region 162037	995 bp downstream