rs251184521 SNP Detail

Summary

• ID
  rs251184521
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88191992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGGCTAT ATAGCAAGAC
  AGGCTTTAAA GACAAAGTAG CAAGATTTCG TTGGCTCTGG AGCTGAAGGC AGGCCCAGAT
  GGGTGGGCAA GGGACACAGC TGTATTCTTG GGACAGCTGG GGACACAGGC TGGAAAAGGA
  TGCAGGTTCT GAACTAAGGT CTCCAGCGAC CTTTCTTCTC ATCAGAATCT CAGATTACCC
  Y
  AAGGTGACCT AGACACGAGT CCACTCTCAC AGTCACTTCC ATAGTGATTT CTGGAGCAGG
  CCACCAAGGC ACACCACGAT AGCAGTTTGG TCTAGGAAAG TCAAGGGGGC TCACGAGGTT
  GAGGCAGCTA GACAAACAGC TCAAGGCCAA GAGCAAAGGG AGATAGCTGG TGGGAATACC
  CTGCCAGGGA TTCCTGCCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	C3H/HeH	C3H/HeJ	C57BL/6J	DBA/1J	FVB/NJ	NON/ShiLtJ	RF/J	SJL/J	SPRET/EiJ	ZALENDE/EiJ
ss350399209	MGP_WTSI_1_90160845	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	C3H/HeH	C3H/HeJ	C57BL/6J	DBA/1J	FVB/NJ	NON/ShiLtJ	RF/J	SJL/J	SPRET/EiJ	ZALENDE/EiJ
rs251184521					SNP	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350399209	MGP_WTSI_1_90160845	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88191992 () rs orientation: forward

Symbol	Name	Function Class
Hjurp	Holliday junction recognition protein	within coordinates
Mroh2a	maestro heat-like repeat family member 2A	1981 bp downstream
Tssr12870	transcription start site region 12870	548 bp downstream