rs251196275 SNP Detail

Summary

• ID
  rs251196275
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:31956030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACATAACT AAGTACACAG
  ACTTCTGGGA CGTGAGGTGG GGAGAAAGGC CTTTGTTGTC TGAAGACCCT GGATGGAGGC
  CATGCTGCAG GCTAAGGACT TCCCTAATAA AAACCGATGA TTATTTGGCA CCAAATGTAT
  ACCCAGAGTC TTCTGCTCTG GCTGAGCATG CAGTGTCAGA GGCTGGCTCA GGCTGGAGTC
  M
  AATTTCGGCT CTACCTCTTG TAAGACATGA GGTCTGCCAG TTCTCAACAC CCCCATTCAC
  AACCTGCTTC CTTGTCCATA AGATGGGGAA GCCCCGATGG CCATCATGGC CCAGCCACTC
  TAGAATCAGA ACCTAATTTA TTTATCCACA TTGGCCACAG GCAGCGCCCA AGAGCCCCTT
  TCCAAGAAAG CCTGGGTTTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353550511	MGP_WTSI_2_31921538	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251196275					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353550511	MGP_WTSI_2_31921538	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31956030 () rs orientation: forward

Symbol	Name	Function Class
Fam78a	family with sequence similarity 78, member A	within coordinates
Gm16534	predicted gene 16534	1107 bp upstream
Rr367162	regulatory region 367162	849 bp downstream
Rr554785	regulatory region 554785	1865 bp distal
Rr554786	regulatory region 554786	1421 bp distal
Rr554787	regulatory region 554787	136 bp distal
Rr554788	regulatory region 554788	24 bp proximal
Tssr23449	transcription start site region 23449	935 bp upstream
Tssr23450	transcription start site region 23450	899 bp upstream
Tssr23451	transcription start site region 23451	655 bp upstream
Tssr23452	transcription start site region 23452	581 bp upstream
Tssr23453	transcription start site region 23453	561 bp upstream