rs251203982 SNP Detail

Summary

• ID
  rs251203982
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:76804969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACAGTTGG TTTTCTGCGT
  CTTTTGTCAC AGAAGATTTT TGCTTTAGTA ATAAATAAGA CGCCTAGATT TTGGTATCTT
  TGTATTTGCA GCATCAAAAG GCCCGGTAGA CTTGAGTTCC AACGCTTCTA TTGAAATAGC
  CATGACAGGA AGTATGGAGC TAAGTCTCAT TGCTTCTGAC TAACCCACAA AAGGACAAGA
  Y
  AATCTTTCTA AGATATCGAA GTCAATATTT AATTTCATTA TGAGTGAGGA CAATAATGAC
  CGATGTCACT GTGTTCAAAT GCACTGGAAC TCAGCAATAC AATCGCTAGC TTTTTATATC
  TCTGGAGGGA CATCTTTCCA TTTGTGCGAC TCAGGAGTCC CAGATCCATT CTGATAGCTT
  GGACCATGCA GGGTGAAACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365523359	MGP_WTSI_5_77086147	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251203982					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365523359	MGP_WTSI_5_77086147	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:76804969 () rs orientation: forward

Symbol	Name	Function Class
A730089K16Rik	RIKEN cDNA A730089K16 gene	within coordinates
Cpgi15996	CpG island 15996	181 bp proximal
Cracd	capping protein inhibiting regulator of actin	mRNA-UTR
Gm10430	predicted gene 10430	561 bp upstream
Rr613608	regulatory region 613608	718 bp proximal
Rr613609	regulatory region 613609	1219 bp proximal
Tssr46728	transcription start site region 46728	527 bp upstream
Tssr46729	transcription start site region 46729	551 bp upstream
Tssr46730	transcription start site region 46730	605 bp upstream
Tssr46731	transcription start site region 46731	631 bp upstream
Tssr51429	transcription start site region 51429	1188 bp downstream
Tssr51430	transcription start site region 51430	1215 bp downstream
Tssr51431	transcription start site region 51431	1241 bp downstream