rs251210401 SNP Detail

Summary

• ID
  rs251210401
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:174187865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTTATTTC CCTCATTTTC
  ATAGGCAGAG ATCAAGAGTT TGGGGGTGAT GAGCTACAAT GGTGTCAGAC TAGGTCTTCT
  AAGCTAATTA GCATAATTAA TAATTTTTTT TTTTGTAGCG ACTCCCGAGC CGGGAGAGGA
  CCCACGCGTG ACCCGGGCCA AGTACTTCAT TCGGGATGAG TTTCTGGTGA GTAGGACTTG
  K
  AGTCCCTTAC TCCTCCTCAC GAGTATTCTC CAGTCAGTGC TGGATTTGGA GACTGAGCGG
  TCCAGGCCTT CCATTGTATT GTACTATGAG TTGATGGCTG GTCCTCTGGT GGTGGGGTGA
  GGGGCTCCTG GAGAGGGTTG CTTGACCGAG CCCCTCTCTC TGCCTACAGA GAATCAGCAC
  TGCTAGTGGA GATGGGCGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356687553	MGP_WTSI_2_174171573	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251210401					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356687553	MGP_WTSI_2_174171573	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174187865 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gnas	GNAS complex locus			Intron
				Noncoding-Transcript-Variant
Rr397554	regulatory region 397554			1649 bp downstream
Rr572112	regulatory region 572112			1745 bp distal
Rr572113	regulatory region 572113			1072 bp proximal
Tssr792	transcription start site region 792			262 bp upstream
Tssr22136	transcription start site region 22136			1669 bp downstream
Tssr22137	transcription start site region 22137			621 bp downstream
Tssr22138	transcription start site region 22138			556 bp downstream
Tssr22139	transcription start site region 22139			39 bp downstream
Tssr22140	transcription start site region 22140			182 bp upstream
Tssr22141	transcription start site region 22141			245 bp upstream
Tssr22142	transcription start site region 22142			285 bp upstream
Tssr22143	transcription start site region 22143			380 bp upstream
Tssr22144	transcription start site region 22144			495 bp upstream
Tssr22145	transcription start site region 22145			524 bp upstream
Tssr22146	transcription start site region 22146			530 bp upstream
Tssr28013	transcription start site region 28013			943 bp upstream
Tssr28014	transcription start site region 28014			532 bp upstream