rs251219436 SNP Detail

Summary

• ID
  rs251219436
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:190549506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGAGACA GAGAGAGAGA
  GAGAGAGAGA GAGAGAGAGA GAGAGACCTC CTTAAGGTGA CAGCCAAATC CAGCTGCTGT
  ATAGAGCATA CATCACTGTG GAGTTAGCTC ACCTATAACA CTGAATCTCC AAAATGCATT
  CATCTTAACA GAAATTCATC TGTTAACCAT AGTTAGAAAA AACACAGAAA ATTTTTATAA
  W
  TTTTTAAGGT TTTTAGAAAA AAATTACCAA AAGCAATAAA TAAATAGATA CATAAACAAA
  CAAACAAACA AACAAACAGA ATGATACCAA AACCATCCTC TAAATAGAGT CTCAAAACGT
  CAACTGGTGA CTGGGTTTGT GTTAATTTCA ATCTCTTCTT CTAGATTCGT ACTTATTTGC
  TGGGCACGGG TGTTTTGCCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320193977	CHEV_1_192641188	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251219436					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190549506 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm70960	predicted gene, 70960			within coordinates
Rps6kc1	ribosomal protein S6 kinase polypeptide 1			Intron
				Noncoding-Transcript-Variant
Rr425988	regulatory region 425988			835 bp distal