rs251221454 SNP Detail

Summary

• ID
  rs251221454
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88865341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCATCCTTC CCCGGGTTCC CCGGGACGCT
  TCTCATTTCA GGGGGACTAA ACTTGGAGCA GCTCCGGTGC TCAAGAGCAG GGCCAGTACT
  CACTCTGCCA GGCTCTGTGT GCAGTGTGCA TGGCGCAAAT ATGCCACAGA CCCGCCTTCT
  Y
  TGGGCTGCAC TTGCAGGCAG GAAGCAGAGA TGTTTTCTGA GTAATGTATG GAATGGCCCA
  CCTTAGCGCC TTGGCAGTGT CCACTTCTGG TGGATTTCTG TGTCTCATTC AGGTGTCATT
  GGGTCCCATC CAATTGGTAT CGGAATGCGT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323783395	CHEV_11_88835829	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251221454					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88865341 () rs orientation: forward

Symbol	Name	Function Class
2210409E12Rik	RIKEN cDNA 2210409E12 gene	1513 bp downstream
Coil	coilin	within coordinates
Cpgi3523	CpG island 3523	within coordinates
Gm10367	predicted gene 10367	354 bp upstream
Rr237597	regulatory region 237597	1660 bp proximal
Rr247482	regulatory region 247482	within coordinates
Rr253858	regulatory region 253858	1863 bp proximal
Tssr104059	transcription start site region 104059	591 bp downstream
Tssr104060	transcription start site region 104060	554 bp downstream