rs251228759 SNP Detail

Summary

• ID
  rs251228759
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:6950680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGGGTGG TACACGTACT
  GCATACACAT ATACAAAGTG GTCATAACAT AAATTTGTAA CACATAAAAT AACAAAAAGT
  AGCATAAAAG AGAAGCCTAG TGGTGCAGGC CTTTAATCCC AGCACTTGGG AGGCAGAGGC
  AGGCAGATTT TTGAGTTCGA GGCCAGCCTG GTCTACAGAG TGAGTTCCAG GACAGCCAGA
  R
  CGATACAGAG AAACCCTGTC TCGAAAAAAA AAAAAAAAAA AAAAAAAAGC CTAAAGTCCC
  GGGTTTGAGT TTGGAGGTAG CAGCATCTGT GGGACCCTAA GCCAAACTCT GAAATCTGCC
  TGCTCAGAAG ATGTCCATAC AGGGCTAGGA CTTGCTGTCC CTGTAATCTT GAGACTATTT
  GAAACTGAGA GCCATAGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401683880	MGP_WTSI_19_7047802	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251228759					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401683880	MGP_WTSI_19_7047802	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6950680 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10537	CpG island 10537	910 bp proximal
Plcb3	phospholipase C, beta 3	within coordinates
Ppp1r14b	protein phosphatase 1, regulatory inhibitor subunit 14B	1736 bp upstream
Rr543521	regulatory region 543521	1342 bp distal
Rr543522	regulatory region 543522	1166 bp proximal
Rr543523	regulatory region 543523	1876 bp proximal
Tssr154704	transcription start site region 154704	1301 bp upstream
Tssr154705	transcription start site region 154705	1639 bp upstream
Tssr154706	transcription start site region 154706	1736 bp upstream
Tssr154707	transcription start site region 154707	1764 bp upstream
Tssr154708	transcription start site region 154708	1799 bp upstream
Tssr154709	transcription start site region 154709	1810 bp upstream
Tssr154710	transcription start site region 154710	1826 bp upstream
Tssr154711	transcription start site region 154711	1900 bp upstream