rs251231149 SNP Detail

Summary

• ID
  rs251231149
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:110434079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGATGTCTA AGTCGCCCCG
  GGCGCCCACC CAACAGCTAG GCAGTCGGGC ACCCGGCCCG GGACACAGGG CACAGGGCGG
  GGACGGCCTG ACATTTTCTG CCCTTCCTCC GCCCTCAGCG AGCCCGGCCG TCCCGCCACG
  CGCGCGGCCA GCTAGTGCAC TCTTTTCCCC CGGTCCCTGC GACCCACCCT CTGCGCTCGC
  S
  GGAGGATTGG AGAGCCGAGG GGCGGGGCGG GGCGGGGCGG GGCGATGGGG GCGGGCCCCG
  GCTAGGTCCA TCTGAGGCCG CGCCTTCTCA TTGGCCGAAG CCGTAGCCTC GCGAGAGCAC
  GTGGAGAGCG CGCCAAATTC TCCCCGGAGC CTGAGGGAGC TTTGGAGCGT CGCAATGGTC
  CTGAGGAACA GTGGACGGAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss366233058	MGP_WTSI_5_110715232	EVA_MGPV3	EVA_MGPV3	f	SNP	G	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	G	G	C	C	G	G	G	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs251231149					SNP	G	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	G	G	C	C	G	G	G	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366233058	MGP_WTSI_5_110715232	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:110434079 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16226	CpG island 16226	within coordinates
Pole	polymerase (DNA directed), epsilon	106 bp upstream
Pxmp2	peroxisomal membrane protein 2	43 bp upstream
Rr399252	regulatory region 399252	1405 bp downstream
Rr616864	regulatory region 616864	38 bp distal
Rr616865	regulatory region 616865	within coordinates
Rr616866	regulatory region 616866	139 bp proximal
Tssr47885	transcription start site region 47885	113 bp upstream
Tssr52499	transcription start site region 52499	185 bp upstream
Tssr52500	transcription start site region 52500	161 bp upstream
Tssr52501	transcription start site region 52501	58 bp upstream
Tssr52502	transcription start site region 52502	36 bp upstream