rs251233568 SNP Detail

Summary

• ID
  rs251233568
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:57241201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGACACATT GTGACATGCT
  AGAGCTTCCA CATTGAGTTT TGTTTTTTTT TTTCTTTTGG AGGGTAGGTT GAAAGGGCAG
  AAGACAGGTA AGGAGGAATG GGGAGATGAG TGGGATTGGG GTACTTAATG TGAAATTTAC
  AAAGAATCAA TAAGAAATTA ACTTCTACTA GTAAAAATAC CCCCCCCCCC CAAAAAAAAA
  R
  CAAAAAAAAA AAAAACTTCA CAAGTGTGTT CAGCAGCTTG CCTATTAGTT GATTCCAGGT
  TTAATCAAGT TGATAACTTG TAACAGGGTC CCAGACCTTA GTAGGCCTCC AGACCTTAGC
  ACAAATGACT CCACAATGAA AGTACCATCC AGTTTTTAGA AACCGGACCG TGAAGCTTTG
  CGCTTCCTCT TTCCAGCCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	LEWES/EiJ	NON/ShiLtJ	ZALENDE/EiJ
ss377687127	MGP_WTSI_9_57181725	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	A	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	LEWES/EiJ	NON/ShiLtJ	ZALENDE/EiJ
rs251233568					SNP	G	G	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377687127	MGP_WTSI_9_57181725	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:57241201 () rs orientation: forward

Symbol	Name	Function Class
Gm5121	predicted gene 5121	210 bp upstream
Tssr85298	transcription start site region 85298	148 bp upstream