rs251239662 SNP Detail

Summary

• ID
  rs251239662
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156031869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATTGAGAA AGGGATAGAC
  ACACTCAAGC CATGCTGTGA TGTAGGTACA TGCCTGTTAT CCCATTCCTC AATTCCCAGC
  AAAGCAATGG CCATGAAGCT GGTTCTAGCA CAAAGCAGGC TACAGCACAA GGGCAGGGTA
  GGAGTTTCCT GTACAGAACA GAATGACTCA AGGAAATCTA CAGCTTCTCA GTTGTGTCTT
  A
  GAGAGTACAG ACACCATGTT TCTCAGTTTG TGTCTTACAG AGAGTACAGA CATTGTTTTT
  GGAACTCTTC CCACATTGGC TTGGTTTTCA AATGCGTCAC TTTATTTTCA CCCACGACAG
  CCAGGTCTCT TAATCACCAC TAAGCTGGGG CTGGAGAGAT GGCTCAGTAG TTGAGAGCAC
  TGATTGCTCT TCCAGAGGTC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	NZB/BlNJ	PWK/PhJ	RF/J	SPRET/EiJ	ST/bJ
ss356230937	MGP_WTSI_2_156015685	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	NZB/BlNJ	PWK/PhJ	RF/J	SPRET/EiJ	ST/bJ
rs251239662					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356230937	MGP_WTSI_2_156015685	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156031869 () rs orientation: forward

Symbol	Name	Function Class
Rr568204	regulatory region 568204	1026 bp distal
Rr568205	regulatory region 568205	79 bp proximal
Rr568206	regulatory region 568206	1549 bp proximal
Rr568207	regulatory region 568207	1762 bp proximal