rs251248572 SNP Detail

Summary

• ID
  rs251248572
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:52562673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gtctctcaa tcaaaaccta agcttgctga
  catggcaaga cttattctga gatccccatc tctgcctcct gagactgcac ttaggtggac
  tgccgtgccg ccttggcatg tatttgggtt ctgggtacca gccctccagt cctcacactt
  K
  tacagcaagc gctttaacca ctaaaccacc gctccTGAAT TGACCATGTA TTTCATGGTA
  CCCATTAGGT GCATGTGTGT ATATGCCTTC ACATGAGAGG Ctgcatatgg aggccagatg
  gcaatcttga gcatgcccta gaagagccat                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319720398	CHEV_1_52580358	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251248572					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:52562673 () rs orientation: forward

Symbol	Name	Function Class
Gm553	predicted gene 553	within coordinates
Gm53065	predicted gene 53065	within coordinates
Rps27a-ps1	ribosomal protein S27A, pseudogene 1	813 bp downstream
Rr410875	regulatory region 410875	1533 bp distal
Rr410876	regulatory region 410876	533 bp proximal