rs251253364 SNP Detail

Summary

• ID
  rs251253364
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96512003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGCTATGC ATCAGGTCAA
  AGCAGAAGGT AACTTACTCC TAAAAACAGC CCAACCCTAA ATCTCAACTC CAACAGAGCA
  CACTGTCTTC CCACAACACA ATCTGCTTTT ATAGATTCGC AAGGCTTCAA CAGTGTCTAG
  CATCAAGTCA CAGAAAAATA TAAAGTAGTA AAAATTTGAA AAACCTAATT AGTAGGGGAA
  R
  AAAATTCTAG TGTATTTGGC TTTTCCCAAA CATTACATAC ATGCAAATAT TAACTGTAAG
  AAAGCTAATT TGTGAAAAGT TTACACCCTA AGAAAGTAAC TTAAAATACT GGGAACTTAA
  GACGCACAAA ACACCCACTG CTCTGGTGTA ATTTCCCAAG TTTTAATACT TAAAAGTGTC
  TGAATTGGGA GTCCCAGGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323111047	CHEV_9_96530369	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251253364					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96512003 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22167	CpG island 22167	493 bp proximal
Rasa2	RAS p21 protein activator 2	within coordinates
Tssr86611	transcription start site region 86611	1043 bp upstream
Tssr90973	transcription start site region 90973	675 bp downstream
Tssr90974	transcription start site region 90974	921 bp downstream
Tssr90975	transcription start site region 90975	1232 bp downstream
Tssr90976	transcription start site region 90976	1537 bp downstream