rs251253905 SNP Detail

Summary

• ID
  rs251253905
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:32877278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCCACAGC TGGTCAAATA
  GGAAAGGCAT GGTCTGCATG TGCATCTTCA TACTAAAGTA CATTGATGTC TCACAAGCAG
  ACATGTGGTC TTTTACTAGG CACCAAGGTT GATGATATAC AGCTTTTTAA AAAATGTATA
  ATAACCAATG TACAGAATAG TAAACATTAT TTTAAATGCT GTCCATTTTT CACAGAAGAA
  Y
  AAGAAGGGCC CTGACCTGTT CTGCCTGGAT CCCATCTGCT GCTAGCCCAT CTTAGCCTTG
  CTCTCACATA CCTTCCCTCC TCACTCCATA TCCTAGCCCA GCCCAGCCCA GCCCAGCCCA
  GCCCAGCCCA GCCCAGCCCA GCCCAGCCCA GCCCTAGCTG TGTTCTTCTA GCTGGGCTAT
  TGATCCCTGG AATCTGACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325362707	CHEV_17_32795249	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251253905					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:32877278 () rs orientation: forward

Symbol	Name	Function Class
Cyp4f40	cytochrome P450, family 4, subfamily f, polypeptide 40	596 bp upstream
Gm65897	predicted gene, 65897	within coordinates
Rr525786	regulatory region 525786	within coordinates
Rr525787	regulatory region 525787	367 bp proximal
Rr525788	regulatory region 525788	607 bp proximal
Tssr143725	transcription start site region 143725	574 bp upstream
Tssr143726	transcription start site region 143726	662 bp upstream
Tssr143727	transcription start site region 143727	685 bp upstream
Tssr143728	transcription start site region 143728	705 bp upstream
Tssr143729	transcription start site region 143729	717 bp upstream
Tssr143730	transcription start site region 143730	740 bp upstream
Tssr143731	transcription start site region 143731	762 bp upstream
Tssr143732	transcription start site region 143732	776 bp upstream