rs251260162 SNP Detail

Summary

• ID
  rs251260162
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79952310 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCGTCGCCT CCGTCGGAAG
  CAGCGTCCCC GGGGACCCGA ATTGGGGGGA CGCGAGGGTT GGGGGGGCTC ATTGCTTTTT
  TTTTTTTCAT TCTTATTTTC ATTTTTTTTC TCCCTGAGCA CCTAGAAGAA AAGGGGAAAA
  TCAAAAGTGA AGAATTGGCG CCCAGGAAGC GGACGTGGAC CCGGTTGTGG GGACCGGGAG
  R
  GTTGTGGAGG TCGTTCCTGT TTTTCCCCGT TCCTTTTTTC CCCTTCTTGG AACATTTGGA
  AGAAGCGGGT GGGGGGGGGG GAATTCGAAC TTGAAAAGAA TTGGCGCTCC CGAAGGGGAC
  GAGGACAAAG AGTGGGCCAG GATGGACGTG GCGGACCCCG AGCCGTTGGG CCTTTTCTCC
  GAGGGCGAGC TGATGTCGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381014773	MGP_WTSI_10_79579221	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251260162					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381014773	MGP_WTSI_10_79579221	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79952310 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1843	CpG island 1843	within coordinates
Gm67739	predicted gene, 67739	1196 bp upstream
Rr216700	regulatory region 216700	1710 bp distal
Rr225154	regulatory region 225154	within coordinates
Rr384985	regulatory region 384985	70 bp downstream
Stk11	serine/threonine kinase 11	within coordinates
Tssr94480	transcription start site region 94480	652 bp downstream
Tssr94481	transcription start site region 94481	590 bp downstream
Tssr94482	transcription start site region 94482	210 bp downstream
Tssr94483	transcription start site region 94483	198 bp downstream
Tssr94484	transcription start site region 94484	87 bp downstream
Tssr94485	transcription start site region 94485	819 bp upstream
Tssr98400	transcription start site region 98400	639 bp downstream
Tssr98401	transcription start site region 98401	1510 bp downstream