rs251260277 SNP Detail

Summary

• ID
  rs251260277
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140429284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACGCTGGGG AAGGGGGGGT
  TGGGGGACGG AATGAATAAG AAGGGGAAGG AAGGCGGATC CACGTGGTTT AATCGGAGAC
  AGACAGAGAT CCCATTGTTC AAAATCAATA AAAAAAAAAA AAAAAAAAAA AAGCAGACGG
  GGCGAGCGCC GGGCCGCGGG GGCCGGGCTG GGGCCCCACG AAAGTTCCTC TTTTCGCGCG
  W
  GCTCGCAGGT GCTTGGGGCC CGGCCGGGGT ACAGGGGGGG GTCCCCGCGT GGCGCGCGGC
  GTGGGGAGGG GCGAGGGAGC AGCAGGTGGG GCGGCCCACG CCGCGCCGCG CGTCCCCTCC
  CCCGCCCCGC AGCCCGCCCC GTGTGCATTG TGCGCCCCGT GTGTCTCCCG CAGCCCGGCG
  ACCATGCCCA GGAAGAAGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363501331	MGP_WTSI_4_140257888	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251260277					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363501331	MGP_WTSI_4_140257888	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140429284 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15194	CpG island 15194	1994 bp distal
Cpgi15195	CpG island 15195	within coordinates
Gm69527	predicted gene, 69527	703 bp upstream
Gm69529	predicted gene, 69529	1503 bp downstream
Rcc2	regulator of chromosome condensation 2	within coordinates
Rr377298	regulatory region 377298	249 bp downstream
Rr603518	regulatory region 603518	1422 bp distal
Rr603519	regulatory region 603519	714 bp distal
Rr603520	regulatory region 603520	490 bp distal
Rr603521	regulatory region 603521	542 bp distal
Tssr39972	transcription start site region 39972	1998 bp downstream
Tssr39973	transcription start site region 39973	1975 bp downstream
Tssr39974	transcription start site region 39974	1627 bp downstream
Tssr39975	transcription start site region 39975	1488 bp downstream
Tssr39976	transcription start site region 39976	1444 bp downstream
Tssr39977	transcription start site region 39977	1360 bp downstream
Tssr39978	transcription start site region 39978	536 bp downstream
Tssr39979	transcription start site region 39979	510 bp downstream
Tssr39980	transcription start site region 39980	464 bp downstream
Tssr39981	transcription start site region 39981	452 bp downstream
Tssr39982	transcription start site region 39982	425 bp downstream
Tssr39983	transcription start site region 39983	354 bp downstream
Tssr39984	transcription start site region 39984	134 bp downstream
Tssr39985	transcription start site region 39985	51 bp downstream
Tssr39986	transcription start site region 39986	11 bp downstream
Tssr39987	transcription start site region 39987	108 bp upstream
Tssr39988	transcription start site region 39988	204 bp upstream
Tssr39989	transcription start site region 39989	243 bp upstream
Tssr44273	transcription start site region 44273	884 bp upstream
Tssr44274	transcription start site region 44274	425 bp downstream
Tssr44275	transcription start site region 44275	1693 bp downstream